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1

Profiling of adhesive-related genes in the freshwater cnidarian Hydra magnipapillata by transcriptomics and proteomics

Rodrigues, Marcelo, Ostermann, Thomas, Kremeser, Leopold, Lindner, Herbert, Beisel, Christian, Berezikov, Eugene, Hobmayer, Bert, Ladurner, Peter

Journal:

Year:

2016

Language:

english

File:

PDF, 2.39 MB

english, 2016

2

Zili is required for germ cell differentiation and meiosis in zebrafish

Houwing, Saskia, Berezikov, Eugene, Ketting, René F

Journal:

The EMBO Journal

Year:

2008

Language:

english

File:

PDF, 757 KB

english, 2008

3

Diversity of microRNAs in human and chimpanzee brain

Berezikov, Eugene, Thuemmler, Fritz, van Laake, Linda W, Kondova, Ivanela, Bontrop, Ronald, Cuppen, Edwin, Plasterk, Ronald H A

Journal:

Nature Genetics

Year:

2006

Language:

english

File:

PDF, 139 KB

english, 2006

4

Detection of microRNAs in frozen tissue sections by fluorescence in situ hybridization using locked nucleic acid probes and tyramide signal amplification

Silahtaroglu, Asli N, Nolting, Dorrit, Dyrskjøt, Lars, Berezikov, Eugene, Møller, Morten, Tommerup, Niels, Kauppinen, Sakari

Journal:

Nature Protocols

Year:

2007

Language:

english

File:

PDF, 844 KB

english, 2007

5

Evolution of microRNA diversity and regulation in animals

Berezikov, Eugene

Journal:

Nature Reviews Genetics

Year:

2011

Language:

english

File:

PDF, 892 KB

english, 2011

6

Genome-wide RNA Tomography in the Zebrafish Embryo

Junker, Jan Philipp, Noël, Emily S., Guryev, Victor, Peterson, Kevin A., Shah, Gopi, Huisken, Jan, McMahon, Andrew P., Berezikov, Eugene, Bakkers, Jeroen, van Oudenaarden, Alexander

Journal:

Year:

2014

Language:

english

File:

PDF, 3.81 MB

english, 2014

7

The regenerative flatworm Macrostomum lignano, a model organism with high experimental potential

Mouton, Stijn, Wudarski, Jakub, Grudniewska, Magda, Berezikov, Eugene

Journal:

The International Journal of Developmental Biology

Year:

2018

Language:

english

File:

PDF, 3.47 MB

english, 2018

8

Evidence for post-transcriptional regulation of clustered microRNAs in Drosophila

Sergei S Ryazansky, Vladimir A Gvozdev, Eugene Berezikov

Journal:

Year:

2011

Language:

english

File:

PDF, 1.63 MB

english, 2011

9

Functional microRNA screening using a comprehensive lentiviral human microRNA expression library

Jos B Poell, Rick J van Haastert, Francesco Cerisoli, Anne S Bolijn, Lisette M Timmer, Begoña Diosdado-Calvo, Gerrit A Meijer, Andre AFL van Puijenbroek, Eugene Berezikov, Roel QJ Schaapveld, Edwin Cu

Journal:

Year:

2011

Language:

english

File:

PDF, 846 KB

english, 2011

10

Expression patterns of intronic microRNAs inCaenorhabditis elegans

Meltem Isik, Hendrik C Korswagen, Eugene Berezikov

Journal:

Year:

2010

Language:

english

File:

PDF, 1.59 MB

english, 2010

11

Molecular phylogeny of theChironomusgenus deduced from nucleotide sequences of two nuclear genes,ssp 160and the globin 2b gene

I. F. Makarevich, E. V. Berezikov, V. P. Guryev, A. G. Blinov

Journal:

Molecular Biology

Year:

2000

Language:

english

File:

PDF, 607 KB

english, 2000

12

The Evolution of SINEs and LINEs in the GenusChironomus(Diptera)

Ekaterina Papusheva, Mary C. Gruhl, Eugene Berezikov, Tatiana Groudieva, Svetlana V. Scherbik, Jon Martin, Alexander Blinov, Gerald Bergtrom

Journal:

Journal of Molecular Evolution

Year:

2004

Language:

english

File:

PDF, 284 KB

english, 2004

13

Identifying polymorphisms in the Rattus norvegicus D3 dopamine receptor gene and regulatory region

B. M. G. Smits, U. M. D'Souza, E. Berezikov, E. Cuppen, F. Sluyter

Journal:

Genes, Brain and Behavior

Year:

2004

Language:

english

File:

PDF, 3.45 MB

english, 2004

14

Hen1 is required for oocyte development and piRNA stability in zebrafish

Kamminga, Leonie M, Luteijn, Maartje J, den Broeder, Marjo J, Redl, Stefan, Kaaij, Lucas J T, Roovers, Elke F, Ladurner, Peter, Berezikov, Eugene, Ketting, René F

Journal:

The EMBO Journal

Year:

2010

Language:

english

File:

PDF, 2.23 MB

english, 2010

15

Evolutionary flux of canonical microRNAs and mirtrons in Drosophila

Flynt, Alex S, Hodges, Emily, Rooks, Michelle, Hannon, Gregory J, Lai, Eric C, Berezikov, Eugene, Liu, Na

Journal:

Nature Genetics

Year:

2010

Language:

english

File:

PDF, 354 KB

english, 2010

16

Approaches to microRNA discovery

Berezikov, Eugene, Cuppen, Edwin, Plasterk, Ronald H A

Journal:

Nature Genetics

Year:

2006

Language:

english

File:

PDF, 279 KB

english, 2006

17

MicroRNA expression profiles of human leukemias

Takada, S, Yamashita, Y, Berezikov, E, Hatanaka, H, Fujiwara, S-i, Kurashina, K, Watanabe, H, Enomoto, M, Soda, M, Choi, Y L

Journal:

Year:

2007

Language:

english

File:

PDF, 399 KB

english, 2007

18

Analysis of degenerate motifs in the promoters of miRNA genes expressed in different mammalian tissues

O. V. Vishnevsky, K. V. Gunbin, A. V. Bocharnikov, E. V. Berezikov

Journal:

Moscow University Biological Sciences Bulletin

Year:

2010

Language:

english

File:

PDF, 113 KB

english, 2010

19

Laser diagnostics of the centrifugal nozzle spray cone structure

V. A. Arkhipov, A. P. Berezikov, A. S. Zhukov, I. R. Akhmadeev, S. S. Bondarchuk

Journal:

Russian Aeronautics (Iz VUZ)

Year:

2009

Language:

english

File:

PDF, 225 KB

english, 2009

20

On the Quasi‐Steadiness Hypothesis as Applied to Gas Exhaustion from a Receiver

V. A. Arkhipov, A. P. Berezikov, V. F. Trofimov

Journal:

Journal of Applied Mechanics and Technical Physics

Year:

2004

Language:

english

File:

PDF, 177 KB

english, 2004

21

Absorption of ultrasound in CdS single crystals in relation to intensity and spectral composition of illumination

S. N. Baranovskii, D. V. Sheloput, A. A. Popov, D. D. Berezikov, V. G. Adon'ev, A. A. Kornilovich, V. M. Mastikhin, L. L. Mendrin, L. N. Moshkin, E. B. Selivanova

Journal:

Russian Physics Journal

Year:

1967

Language:

english

File:

PDF, 161 KB

english, 1967

22

Boule-like genes regulate male and female gametogenesis in the flatworm Macrostomum lignano

Georg Kuales, Katrien De Mulder, Jade Glashauser, Willi Salvenmoser, Shigeo Takashima, Volker Hartenstein, Eugene Berezikov, Walter Salzburger, Peter Ladurner

Journal:

Developmental Biology

Year:

2011

Language:

english

File:

PDF, 5.91 MB

english, 2011

23

Fine-tuning the brain: MicroRNAs

Erno Vreugdenhil, Eugene Berezikov

Journal:

Frontiers in Neuroendocrinology

Year:

2010

Language:

english

File:

PDF, 258 KB

english, 2010

24

A position-dependent organisation of retinoid response elements is conserved in the vertebrate Hox clusters

Gaëll Mainguy, Paul M.J In der Rieden, Eugene Berezikov, Joost M Woltering, Ronald H.A Plasterk, Antony J Durston

Journal:

Trends in Genetics

Year:

2003

Language:

english

File:

PDF, 98 KB

english, 2003

25

CASCAD: a database of annotated candidate single nucleotide polymorphisms associated with expressed sequences

Victor Guryev, Eugene Berezikov, Edwin Cuppen

Journal:

Year:

2005

Language:

english

File:

PDF, 561 KB

english, 2005

26

A Role for Piwi and piRNAs in Germ Cell Maintenance and Transposon Silencing in Zebrafish

Saskia Houwing, Leonie M. Kamminga, Eugene Berezikov, Daniela Cronembold, Angélique Girard, Hans van den Elst, Dmitri V. Filippov, Heiko Blaser, Erez Raz, Cecilia B. Moens, Ronald H.A. Plasterk, Grego

Journal:

Year:

2007

Language:

english

File:

PDF, 2.06 MB

english, 2007

27

Phylogenetic Shadowing and Computational Identification of Human microRNA Genes

Eugene Berezikov, Victor Guryev, José van de Belt, Erno Wienholds, Ronald H.A. Plasterk, Edwin Cuppen

Journal:

Year:

2005

Language:

english

File:

PDF, 192 KB

english, 2005

28

The TRIM-NHL Protein TRIM32 Activates MicroRNAs and Prevents Self-Renewal in Mouse Neural Progenitors

Jens C. Schwamborn, Eugene Berezikov, Juergen A. Knoblich

Journal:

Year:

2009

Language:

english

File:

PDF, 1.88 MB

english, 2009

29

CDE-1 Affects Chromosome Segregation through Uridylation of CSR-1-Bound siRNAs

Josien C. van Wolfswinkel, Julie M. Claycomb, Pedro J. Batista, Craig C. Mello, Eugene Berezikov, René F. Ketting

Journal:

Year:

2009

Language:

english

File:

PDF, 1.62 MB

english, 2009

30

Mammalian Mirtron Genes

Eugene Berezikov, Wei-Jen Chung, Jason Willis, Edwin Cuppen, Eric C. Lai

Journal:

Year:

2007

Language:

english

File:

PDF, 1.77 MB

english, 2007

31

Small RNAs and the control of transposons and viruses in Drosophila

Ronald P. van Rij, Eugene Berezikov

Journal:

Trends in Microbiology

Year:

2009

Language:

english

File:

PDF, 517 KB

english, 2009

32

Structure and polymorphism of the Chironomus thummi gene encoding special lobe-specific silk protein, ssp160

Eugene Berezikov, Alexander G Blinov, Svetlana Scherbik, Carol K Cox, Steven T Case

Journal:

Year:

1998

Language:

english

File:

PDF, 617 KB

english, 1998

33

microRNAs associated with the different human Argonaute proteins

Dueck, A., Ziegler, C., Eichner, A., Berezikov, E., Meister, G.

Journal:

Nucleic Acids Research

Year:

2012

Language:

english

File:

PDF, 7.74 MB

english, 2012

34

piRNA dynamics in divergent zebrafish strains reveal long-lasting maternal influence on zygotic piRNA profiles

Kaaij, L. J. T., Hoogstrate, S. W., Berezikov, E., Ketting, R. F.

Journal:

Year:

2013

Language:

english

File:

PDF, 1.26 MB

english, 2013

35

The Hippo Pathway Regulates Stem Cells During Homeostasis and Regeneration of the Flatworm Macrostomum Lignano

Demircan, Turan, Berezikov, Eugene

Journal:

Stem Cells and Development

Year:

2013

Language:

english

File:

PDF, 1.02 MB

english, 2013

36

Mesodermal Gene Expression in the Acoel Isodiametra pulchra Indicates a Low Number of Mesodermal Cell Types and the Endomesodermal Origin of the Gonads

Chiodin, Marta, Børve, Aina, Berezikov, Eugene, Ladurner, Peter, Martinez, Pedro, Hejnol, Andreas, Schubert, Michael

Journal:

Year:

2013

Language:

english

File:

PDF, 3.85 MB

english, 2013

37

A search for reverse transcriptase-coding sequences reveals new non-LTR retrotransposons in the genome ofDrosophila melanogaster

Eugene Berezikov, Alain Bucheton, Isabelle Busseau

Journal:

Year:

2000

Language:

english

File:

PDF, 547 KB

english, 2000

38

Experimental study of loss of drop shape stability in a swirling flow

Arkhipov, V. A., Berezikov, A. P., Trofimov, V. F., Usanina, A. S.

Journal:

Atmospheric and Oceanic Optics

Year:

2013

Language:

english

File:

PDF, 634 KB

english, 2013

39

The ctenophore genome and the evolutionary origins of neural systems

Moroz, Leonid L., Kocot, Kevin M., Citarella, Mathew R., Dosung, Sohn, Norekian, Tigran P., Povolotskaya, Inna S., Grigorenko, Anastasia P., Dailey, Christopher, Berezikov, Eugene, Buckley, Katherine

Journal:

Year:

2014

Language:

english

File:

PDF, 9.34 MB

english, 2014

40

Tracing the evolution of tissue identity with microRNAs

Katrien De Mulder,Eugene Berezikov

Journal:

Year:

2010

Language:

english

File:

PDF, 349 KB

english, 2010

41

Cloning and expression of new microRNAs from zebrafish

Kloosterman, W. P., Steiner, F. A., Berezikov, E., de Bruijn, E., van de Belt, J., Verheul, M., Cuppen, E., Plasterk, R. H.A.

Journal:

Nucleic Acids Research

Year:

2006

Language:

english

File:

PDF, 634 KB

english, 2006

42

SEX ALLOCATION ADJUSTMENT TO MATING GROUP SIZE IN A SIMULTANEOUS HERMAPHRODITE

Janicke, Tim, Marie-Orleach, Lucas, De Mulder, Katrien, Berezikov, Eugene, Ladurner, Peter, Vizoso, Dita B., Schärer, Lukas

Journal:

Year:

2013

Language:

english

File:

PDF, 439 KB

english, 2013

43

Differences in vertebrate microRNA expression

Ason, B., Darnell, D. K., Wittbrodt, B., Berezikov, E., Kloosterman, W. P., Wittbrodt, J., Antin, P. B., Plasterk, R. H. A.

Journal:

Proceedings of the National Academy of Sciences

Year:

2006

Language:

english

File:

PDF, 1.46 MB

english, 2006

44

Homologous gene targeting in Caenorhabditis elegans by biolistic transformation

Journal:

Nucleic Acids Research

Year:

2004

Language:

english

File:

PDF, 188 KB

english, 2004

45

Functionally distinct regulatory RNAs generated by bidirectional transcription and processing of microRNA loci

Tyler, D. M., Okamura, K., Chung, W.-J., Hagen, J. W., Berezikov, E., Hannon, G. J., Lai, E. C.

Journal:

Genes & Development

Year:

2008

Language:

english

File:

PDF, 1.48 MB

english, 2008

46

CONREAL: Conserved Regulatory Elements Anchored Alignment Algorithm for Identification of Transcription Factor Binding Sites by Phylogenetic Footprinting

Journal:

Genome Research

Year:

2003

Language:

english

File:

PDF, 425 KB

english, 2003

47

Many novel mammalian microRNA candidates identified by extensive cloning and RAKE analysis

Berezikov, E., van Tetering, G., Verheul, M., van de Belt, J., van Laake, L., Vos, J., Verloop, R., van de Wetering, M., Guryev, V., Takada, S., van Zonneveld, A. J., Mano, H., Plasterk, R., Cuppen, E

Journal:

Genome Research

Year:

2006

Language:

english

File:

PDF, 599 KB

english, 2006

48

Repertoire and evolution of miRNA genes in four divergent nematode species

de Wit, E., Linsen, S. E.V., Cuppen, E., Berezikov, E.

Journal:

Genome Research

Year:

2009

Language:

english

File:

PDF, 1008 KB

english, 2009

49

Deep annotation of Drosophila melanogaster microRNAs yields insights into their processing, modification, and emergence

Berezikov, E., Robine, N., Samsonova, A., Westholm, J. O., Naqvi, A., Hung, J.-H., Okamura, K., Dai, Q., Bortolamiol-Becet, D., Martin, R., Zhao, Y., Zamore, P. D., Hannon, G. J., Marra, M. A., Weng,

Journal:

Genome Research

Year:

2011

Language:

english

File:

PDF, 2.85 MB

english, 2011

50

Abundant primary piRNAs, endo-siRNAs, and microRNAs in a Drosophila ovary cell line

Lau, N. C., Robine, N., Martin, R., Chung, W.-J., Niki, Y., Berezikov, E., Lai, E. C.

Journal:

Genome Research

Year:

2009

Language:

english

File:

PDF, 1.77 MB

english, 2009